If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ), 'gf_id' => 'HOM05D000847', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000847' ), 'data_identifier' => 'HOM05D000847', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000847', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '705', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p21340' => 'bna', 'A02p21400' => 'bna', 'A06p01940' => 'bna', 'A06p17850' => 'bna', 'A07p14930' => 'bna', 'A07p27980' => 'bna', 'A07p42970' => 'bna', 'A08p02250' => 'bna', 'A08p28820' => 'bna', 'A09p33090' => 'bna', 'A09p47950' => 'bna', 'A10p17840' => 'bna', 'Aa31LG10G2650' => 'aar', 'Aa31LG1G12590' => 'aar', 'Aa31LG4G7540' => 'aar', 'Aa31LG7G5730' => 'aar', 'Aa31LG8G3260' => 'aar', 'Aa31LG9G14210' => 'aar', 'Aa31sc33G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2448' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.199' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2142' => 'aag', 'Actinidia01813' => 'ach', 'Actinidia02625' => 'ach', 'Actinidia03062' => 'ach', 'Actinidia03729' => 'ach', 'Actinidia06115' => 'ach', 'Actinidia10660' => 'ach', 'Actinidia21675' => 'ach', 'Actinidia28622' => 'ach', 'Actinidia32735' => 'ach', 'Actinidia38278' => 'ach', 'Ah.01g002890' => 'amhyb', 'Ah.01g021550' => 'amhyb', 'Ah.02g117560' => 'amhyb', 'Ah.02g117580' => 'amhyb', 'Ah.05g171000' => 'amhyb', 'Ah.06g188650' => 'amhyb', 'Ah.10g033680' => 'amhyb', 'Ah.13g068100' => 'amhyb', 'AL1G34950' => 'aly', 'AL1G60430' => 'aly', 'AL2G37710' => 'aly', 'AL3G28770' => 'aly', 'AL5G36070' => 'aly', 'AL8G37230' => 'aly', 'Aqoxy1G01242' => 'aox', 'Aqoxy1G02960' => 'aox', 'Aqoxy4G00586' => 'aox', 'Aqoxy6G00245' => 'aox', 'Aqoxy7G01419' => 'aox', 'Aqoxy7G01631' => 'aox', 'arahy.Tifrunner.gnm1.ann1.99WQY3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DFND2S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT15MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HTSJ7Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KB1BCJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R091XD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T7SF9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UE64WP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPNB5D' => 'arhy', 'AT1G21750' => 'ath', 'AT1G52260' => 'ath', 'AT1G77510' => 'ath', 'AT3G16110' => 'ath', 'AT3G54960' => 'ath', 'AT3G62510' => 'ath', 'AT5G60640' => 'ath', 'ATR0115G017' => 'atr', 'ATR0138G015' => 'atr', 'ATR0315G157' => 'atr', 'Atru.chr1.3326' => 'acertr', 'Atru.chr1.4147' => 'acertr', 'Atru.chr1.4151' => 'acertr', 'Atru.chr12.743' => 'acertr', 'Atru.chr12.770' => 'acertr', 'Atru.chr13.1496' => 'acertr', 'Atru.chr3.3632' => 'acertr', 'AUR62000545' => 'cqu', 'AUR62006896' => 'cqu', 'AUR62011643' => 'cqu', 'AUR62014323' => 'cqu', 'AUR62016471' => 'cqu', 'AUR62019063' => 'cqu', 'AUR62024981' => 'cqu', 'AUR62037662' => 'cqu', 'AUR62039637' => 'cqu', 'AUR62041046' => 'cqu', 'BcaB01g00142' => 'bca', 'BcaB01g04665' => 'bca', 'BcaB02g07708' => 'bca', 'BcaB03g11880' => 'bca', 'BcaB03g14255' => 'bca', 'BcaB03g15945' => 'bca', 'BcaB04g17162' => 'bca', 'BcaB04g17174' => 'bca', 'BcaB05g22656' => 'bca', 'BcaB05g22775' => 'bca', 'BcaB05g25055' => 'bca', 'BcaB07g32174' => 'bca', 'BcaB08g36362' => 'bca', 'BcaC01g01315' => 'bca', 'BcaC01g01316' => 'bca', 'BcaC03g13957' => 'bca', 'BcaC03g15742' => 'bca', 'BcaC03g15745' => 'bca', 'BcaC03g15746' => 'bca', 'BcaC04g19725' => 'bca', 'BcaC05g26096' => 'bca', 'BcaC05g26097' => 'bca', 'BcaC06g34902' => 'bca', 'BcaC07g39122' => 'bca', 'BcaC08g43381' => 'bca', 'BcaC08g47604' => 'bca', 'BcaC09g49835' => 'bca', 'BcaNung00279' => 'bca', 'BcaNung04642' => 'bca', 'BcaNung04647' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p00030' => 'bna', 'BolC1t03181H' => 'bol', 'BolC2t07243H' => 'bol', 'BolC2t07869H' => 'bol', 'BolC2t09488H' => 'bol', 'BolC2t09497H' => 'bol', 'BolC2t09498H' => 'bol', 'BolC3t21376H' => 'bol', 'BolC5t30775H' => 'bol', 'BolC6t35837H' => 'bol', 'BolC6t40179H' => 'bol', 'BolC7t42728H' => 'bol', 'BolC8t49747H' => 'bol', 'BolC8t50625H' => 'bol', 'BolC9t58210H' => 'bol', 'BraA02t05714Z' => 'bra', 'BraA02t07155Z' => 'bra', 'BraA02t07159Z' => 'bra', 'BraA06t23410Z' => 'bra', 'BraA06t24876Z' => 'bra', 'BraA07t29239Z' => 'bra', 'BraA07t30443Z' => 'bra', 'BraA07t31818Z' => 'bra', 'BraA08t32270Z' => 'bra', 'BraA08t34810Z' => 'bra', 'BraA09t38854Z' => 'bra', 'BraA09t40250Z' => 'bra', 'BraA10t43863Z' => 'bra', 'C01p32420' => 'bna', 'C02p11570' => 'bna', 'C02p34630' => 'bna', 'C02p34770' => 'bna', 'C03p73020' => 'bna', 'C03p90530' => 'bna', 'C05p20760' => 'bna', 'C06p07480' => 'bna', 'C06p31230' => 'bna', 'C06p51610' => 'bna', 'C07p21980' => 'bna', 'C08p21100' => 'bna', 'C08p30190' => 'bna', 'C09p27970' => 'bna', 'C09p53370' => 'bna', 'CAN.G1001.27' => 'can', 'CAN.G1156.36' => 'can', 'CAN.G1392.13' => 'can', 'CAN.G1442.2' => 'can', 'CAN.G438.16' => 'can', 'CAN.G553.10' => 'can', 'CAN.G61.25' => 'can', 'CAN.G631.26' => 'can', 'CAN.G643.20' => 'can', 'CAN.G726.6' => 'can', 'CAN.G780.1' => 'can', 'CANSAT25G3371' => 'cansat', 'CANSAT54G2285' => 'cansat', 'CANSAT56G4327' => 'cansat', 'CARHR022140' => 'chi', 'CARHR071030' => 'chi', 'CARHR091270' => 'chi', 'CARHR164940' => 'chi', 'CARHR259470' => 'chi', 'CARHR259480' => 'chi', 'CARHR274320' => 'chi', 'Carub.0001s2120' => 'cru', 'Carub.0001s2121' => 'cru', 'Carub.0001s4123' => 'cru', 'Carub.0002s2440' => 'cru', 'Carub.0003s1584' => 'cru', 'Carub.0005s2157' => 'cru', 'Carub.0008s2132' => 'cru', 'Ca_01125_v3' => 'car', 'Ca_01415_v3' => 'car', 'Ca_16571_v3' => 'car', 'Ca_19254_v3' => 'car', 'CBR_g22064' => 'cbr', 'CBR_g29427' => 'cbr', 'CBR_g32371' => 'cbr', 'CBR_g34569' => 'cbr', 'CBR_g34571' => 'cbr', 'CBR_g34572' => 'cbr', 'Cc01_g11140' => 'ccan', 'Cc04_g03120' => 'ccan', 'Cc07_g21280' => 'ccan', 'Cc09_g02110' => 'ccan', 'Cc10_g12060' => 'ccan', 'CDE02G4656' => 'cde', 'CDE03G0363' => 'cde', 'CDE04G3518' => 'cde', 'CDE05G2545' => 'cde', 'CDE07G1021' => 'cde', 'CDE08G0240' => 'cde', 'CDE12G0078' => 'cde', 'Cfa002087' => 'cfa', 'Cfa004016' => 'cfa', 'Cfa006489' => 'cfa', 'Cfa011319' => 'cfa', 'Cfa012184' => 'cfa', 'Cfa018579' => 'cfa', 'Cfa025955' => 'cfa', 'Ciclev10001327m.g' => 'ccl', 'Ciclev10025300m.g' => 'ccl', 'Ciclev10030218m.g' => 'ccl', 'Ciclev10033369m.g' => 'ccl', 'Ciclev10033667m.g' => 'ccl', 'Ciclev10033773m.g' => 'ccl', 'Ciclev10033842m.g' => 'ccl', 'CiPaw.01G236800' => 'cil', 'CiPaw.02G149100' => 'cil', 'CiPaw.03G116200' => 'cil', 'CiPaw.13G112800' => 'cil', 'CiPaw.14G080600' => 'cil', 'CiPaw.16G066400' => 'cil', 'ClCG03G002150' => 'cla', 'ClCG07G013130' => 'cla', 'ClCG08G005800' => 'cla', 'ClCG11G015810' => 'cla', 'COL.COLO4_23668' => 'col', 'COL.COLO4_23670' => 'col', 'COL.COLO4_23671' => 'col', 'COL.COLO4_23672' => 'col', 'COL.COLO4_24706' => 'col', 'COL.COLO4_30421' => 'col', 'COL.COLO4_37449' => 'col', 'Cpa.g.sc216.11' => 'cpa', 'Cpa.g.sc53.74' => 'cpa', 'Cpa.g.sc53.75' => 'cpa', 'Cpa.g.sc64.100' => 'cpa', 'Cpa.g.sc852.1' => 'cpa', 'Cpa.g.sc852.2' => 'cpa', 'Cre02.g088200' => 'cre', 'CsaV3_1G012800' => 'csa', 'CsaV3_3G025020' => 'csa', 'CsaV3_4G028170' => 'csa', 'CsaV3_6G034330' => 'csa', 'CSS0014662' => 'camsi', 'CSS0023205' => 'camsi', 'CSS0024134' => 'camsi', 'CSS0025498' => 'camsi', 'CSS0029657' => 'camsi', 'CSS0039544' => 'camsi', 'CSS0041673' => 'camsi', 'CSS0044728' => 'camsi', 'CSS0045359' => 'camsi', 'DCAR_007566' => 'dca', 'DCAR_009612' => 'dca', 'DCAR_014386' => 'dca', 'DCAR_018813' => 'dca', 'DCAR_019961' => 'dca', 'Dinv07205' => 'din', 'Dinv11775' => 'din', 'Dinv11776' => 'din', 'Dinv27296' => 'din', 'Dinv30490' => 'din', 'Dinv32746' => 'din', 'Duzib093G0770' => 'dzi', 'Duzib106G1123' => 'dzi', 'Duzib116G0083' => 'dzi', 'Duzib150G0656' => 'dzi', 'Duzib168G0284' => 'dzi', 'Duzib235G1387' => 'dzi', 'ECA232G3820' => 'eca', 'ECA233G0516' => 'eca', 'ECA233G6000' => 'eca', 'ECA238G4593' => 'eca', 'ECA246G0027' => 'eca', 'EL10Ac1g01033' => 'bvu', 'EL10Ac3g06210' => 'bvu', 'EL10Ac4g08887' => 'bvu', 'EL10Ac4g09672' => 'bvu', 'EL10Ac6g15108' => 'bvu', 'EL10Ac7g16622' => 'bvu', 'EL10Ac9g22021' => 'bvu', 'EL10Ac9g22514' => 'bvu', 'Eucgr.B02496' => 'egr', 'Eucgr.F03031' => 'egr', 'Eucgr.F04345' => 'egr', 'FAN02G1503' => 'fan', 'FAN05G5441' => 'fan', 'FAN09G1049' => 'fan', 'FAN11G3083' => 'fan', 'FAN14G1800' => 'fan', 'FAN15G1215' => 'fan', 'FAN16G2905' => 'fan', 'FAN20G0853' => 'fan', 'FAN21G2364' => 'fan', 'FAN24G1770' => 'fan', 'FAN25G1712' => 'fan', 'FAN27G1634' => 'fan', 'FvH4_2g27200' => 'fve', 'FvH4_3g32410' => 'fve', 'FvH4_6g31670' => 'fve', 'Glyma.04G247900' => 'gma', 'Glyma.04G248002' => 'gma', 'Glyma.06G114700' => 'gma', 'Glyma.06G114800' => 'gma', 'Glyma.11G146800' => 'gma', 'Glyma.12G067700' => 'gma', 'Glyma.12G172800' => 'gma', 'Glyma.13G077300' => 'gma', 'Glyma.13G326200' => 'gma', 'Glyma.13G357700' => 'gma', 'Glyma.14G152000' => 'gma', 'Glyma.15G015700' => 'gma', 'Gohir.A01G189600' => 'ghi', 'Gohir.A03G034100' => 'ghi', 'Gohir.A05G102600' => 'ghi', 'Gohir.A05G131300' => 'ghi', 'Gohir.A05G236000' => 'ghi', 'Gohir.A05G269000' => 'ghi', 'Gohir.D01G180000' => 'ghi', 'Gohir.D02G079900' => 'ghi', 'Gohir.D03G134200' => 'ghi', 'Gohir.D05G102300' => 'ghi', 'Gohir.D05G130800' => 'ghi', 'Gohir.D05G238200' => 'ghi', 'Gohir.D05G270900' => 'ghi', 'Gorai.002G222600' => 'gra', 'Gorai.003G141300' => 'gra', 'Gorai.005G089200' => 'gra', 'Gorai.009G106600' => 'gra', 'Gorai.009G134500' => 'gra', 'Gorai.009G246700' => 'gra', 'Gorai.009G283800' => 'gra', 'GSVIVG01008848001' => 'vvi', 'GSVIVG01014013001' => 'vvi', 'GSVIVG01016282001' => 'vvi', 'GSVIVG01017063001' => 'vvi', 'GSVIVG01022364001' => 'vvi', 'GSVIVG01025184001' => 'vvi', 'HanXRQChr01g0011491' => 'han', 'HanXRQChr05g0148751' => 'han', 'HanXRQChr07g0197531' => 'han', 'HanXRQChr12g0380501' => 'han', 'HanXRQChr12g0380511' => 'han', 'HanXRQChr14g0434401' => 'han', 'HanXRQChr15g0469271' => 'han', 'HanXRQChr15g0469281' => 'han', 'HanXRQChr16g0500911' => 'han', 'Haze_16372' => 'cav', 'Haze_16373' => 'cav', 'Haze_17502' => 'cav', 'Haze_23831' => 'cav', 'Haze_23833' => 'cav', 'Haze_27036' => 'cav', 'Haze_27096' => 'cav', 'Hma1.2p1_0134F.1_g061570' => 'hma', 'Hma1.2p1_0134F.1_g061580' => 'hma', 'Hma1.2p1_0242F.1_g100720' => 'hma', 'Hma1.2p1_0242F.1_g100730' => 'hma', 'Hma1.2p1_1031F.1_g250080' => 'hma', 'Hma1.2p1_1365F.1_g278410' => 'hma', 'Hma1.2p1_2395F.1_g321320' => 'hma', 'Hma1.2p1_3125F.1_g332900' => 'hma', 'HPP92_002611' => 'vpl', 'HPP92_002689' => 'vpl', 'HPP92_004459' => 'vpl', 'HPP92_021741' => 'vpl', 'Hund06624' => 'sun', 'Hund07216' => 'sun', 'Hund08133' => 'sun', 'Hund12043' => 'sun', 'Hund17301' => 'sun', 'Hund21794' => 'sun', 'Hund26799' => 'sun', 'Lalb_Chr03g0027331' => 'lal', 'Lalb_Chr08g0241351' => 'lal', 'Lalb_Chr11g0066021' => 'lal', 'Lalb_Chr14g0373311' => 'lal', 'Lalb_Chr14g0374681' => 'lal', 'Lalb_Chr24g0394621' => 'lal', 'Lj1A192G36' => 'lonja', 'Lj1C914T5' => 'lonja', 'Lj1g0012451' => 'lja', 'Lj1g0020377' => 'lja', 'Lj2A869T15' => 'lonja', 'Lj2C861G0' => 'lonja', 'Lj3g0009444' => 'lja', 'Lj3g0020008' => 'lja', 'Lj3g0020214' => 'lja', 'Lj3g0020998' => 'lja', 'Lj4A631T32' => 'lonja', 'Lj5C58T13' => 'lonja', 'Lj7C343G9' => 'lonja', 'Lj7C343T12' => 'lonja', 'Lsat_1_v5_gn_2_114681' => 'lsa', 'Lsat_1_v5_gn_2_37261' => 'lsa', 'Lsat_1_v5_gn_2_98501' => 'lsa', 'Lsat_1_v5_gn_4_101980' => 'lsa', 'Lsat_1_v5_gn_5_68940' => 'lsa', 'Lsat_1_v5_gn_6_95841' => 'lsa', 'Manes.02G164800' => 'mes', 'Manes.04G021500' => 'mes', 'Manes.04G128900' => 'mes', 'Manes.07G100524' => 'mes', 'Manes.10G045700' => 'mes', 'Manes.11G144900' => 'mes', 'Manes.18G078600' => 'mes', 'Mapoly0004s0104' => 'mpo', 'Mapoly0004s0107' => 'mpo', 'Mapoly0010s0047' => 'mpo', 'Mapoly0127s0051' => 'mpo', 'MBI01_g39981_MAGBIO' => 'mbi', 'MBI05_g10539_MAGBIO' => 'mbi', 'MBI06_g35525_MAGBIO' => 'mbi', 'MBI07_g19311_MAGBIO' => 'mbi', 'MBI10_g39520_MAGBIO' => 'mbi', 'MBI11_g02480_MAGBIO' => 'mbi', 'MBI14_g41407_MAGBIO' => 'mbi', 'MCO07G164' => 'mco', 'MCO07G423' => 'mco', 'MCO07G579' => 'mco', 'MD03G1117500' => 'mdo', 'MD04G1082100' => 'mdo', 'MD08G1161100' => 'mdo', 'MD09G1209900' => 'mdo', 'MD11G1135800' => 'mdo', 'MD13G1134800' => 'mdo', 'MD15G1346200' => 'mdo', 'MD17G1191800' => 'mdo', 'Medtr2g093500' => 'mtr', 'Medtr2g094180' => 'mtr', 'Medtr2g101880' => 'mtr', 'Medtr3g088220' => 'mtr', 'Medtr4g059450' => 'mtr', 'Medtr4g077040' => 'mtr', 'MELO3C000126.2' => 'cme', 'MELO3C000199.2' => 'cme', 'MELO3C010490.2' => 'cme', 'MELO3C010625.2' => 'cme', 'MELO3C012969.2' => 'cme', 'MELO3C026855.2' => 'cme', 'MELO3C030169.2' => 'cme', 'MELO3C031893.2' => 'cme', 'MELO3C032285.2' => 'cme', 'Migut.C01120' => 'egut', 'Migut.D02223' => 'egut', 'Migut.D02279' => 'egut', 'Migut.F02003' => 'egut', 'Migut.H00832' => 'egut', 'Migut.I00949' => 'egut', 'MSTRG.1436' => 'ama', 'MSTRG.21124' => 'ama', 'MSTRG.22669' => 'ama', 'MSTRG.23482' => 'ama', 'MSTRG.25377' => 'ama', 'MSTRG.9185' => 'ama', 'Nitab4.5_0000106g0150' => 'nta', 'Nitab4.5_0000196g0100' => 'nta', 'Nitab4.5_0000322g0140' => 'nta', 'Nitab4.5_0000496g0190' => 'nta', 'Nitab4.5_0000575g0200' => 'nta', 'Nitab4.5_0000650g0270' => 'nta', 'Nitab4.5_0001315g0230' => 'nta', 'Nitab4.5_0002910g0010' => 'nta', 'Nitab4.5_0005339g0050' => 'nta', 'Nitab4.5_0005339g0070' => 'nta', 'Nitab4.5_0007257g0040' => 'nta', 'Nitab4.5_0007285g0010' => 'nta', 'Nitab4.5_0007285g0020' => 'nta', 'Nitab4.5_0007421g0020' => 'nta', 'Nitab4.5_0008314g0060' => 'nta', 'Nitab4.5_0010209g0010' => 'nta', 'Nitab4.5_0011334g0010' => 'nta', 'Nitab4.5_0012712g0030' => 'nta', 'Nn1g08862' => 'nnu', 'Nn2g11715' => 'nnu', 'Nn2g13094' => 'nnu', 'Nn5g28348' => 'nnu', 'Nn8g39141' => 'nnu', 'Oeu002869.1' => 'oeu', 'Oeu004204.1' => 'oeu', 'Oeu010544.1' => 'oeu', 'Oeu028237.2' => 'oeu', 'Oeu033504.1' => 'oeu', 'Oeu037851.1' => 'oeu', 'Oeu043941.1' => 'oeu', 'Oeu050100.1' => 'oeu', 'Oeu059091.1' => 'oeu', 'Oeu059445.1' => 'oeu', 'Oeu059968.1' => 'oeu', 'Os02g0100100' => 'osa', 'Os02g0554900' => 'osa', 'Os04g0436300' => 'osa', 'Os06g0163400' => 'osa', 'Os11g0199200' => 'osa', 'Peaxi162Scf00015g00038' => 'pax', 'Peaxi162Scf00051g00109' => 'pax', 'Peaxi162Scf00051g01111' => 'pax', 'Peaxi162Scf00072g00615' => 'pax', 'Peaxi162Scf00101g00813' => 'pax', 'Peaxi162Scf00151g00016' => 'pax', 'Peaxi162Scf00172g00079' => 'pax', 'Peaxi162Scf00270g00824' => 'pax', 'Peaxi162Scf00353g00024' => 'pax', 'PGR044G0158' => 'pgr', 'PGR102G2237' => 'pgr', 'PGR102G3184' => 'pgr', 'PGSC0003DMG400002622' => 'stu', 'PGSC0003DMG400003370' => 'stu', 'PGSC0003DMG400004150' => 'stu', 'PGSC0003DMG400008076' => 'stu', 'PGSC0003DMG400012875' => 'stu', 'PGSC0003DMG400014007' => 'stu', 'PGSC0003DMG400017569' => 'stu', 'PGSC0003DMG401023448' => 'stu', 'Phvul.005G135600' => 'pvu', 'Phvul.005G168200' => 'pvu', 'Phvul.009G126700' => 'pvu', 'Phvul.009G126800' => 'pvu', 'Phvul.011G079000' => 'pvu', 'Potri.001G183500' => 'ptr', 'Potri.002G082100' => 'ptr', 'Potri.005G179000' => 'ptr', 'Potri.008G040100' => 'ptr', 'Potri.009G013600' => 'ptr', 'Potri.010G222100' => 'ptr', 'Pp3c11_1890' => 'ppa', 'Pp3c12_19570' => 'ppa', 'Pp3c12_19580' => 'ppa', 'Pp3c15_5480' => 'ppa', 'Pp3c16_23880' => 'ppa', 'Pp3c18_14580' => 'ppa', 'Pp3c19_20850' => 'ppa', 'Pp3c22_10527' => 'ppa', 'Pp3c22_11700' => 'ppa', 'Pp3c23_1210' => 'ppa', 'Pp3c6_1480' => 'ppa', 'Pp3c7_24350' => 'ppa', 'Pp3c8_20170' => 'ppa', 'PRCOL_00000310' => 'pco', 'Prupe.1G494100' => 'ppe', 'Prupe.3G067900' => 'ppe', 'Prupe.4G280900' => 'ppe', 'Prupe.6G101200' => 'ppe', 'Psat3g068120' => 'psa', 'Psat5g086440' => 'psa', 'Psat5g278320' => 'psa', 'Psat5g298280' => 'psa', 'Psat7g225200' => 'psa', 'PSO063G5698' => 'pso', 'PSO170G5237' => 'pso', 'PSO210G1204' => 'pso', 'PSO210G1389' => 'pso', 'PSO210G5089' => 'pso', 'PSO339G4698' => 'pso', 'PSO339G4708' => 'pso', 'PSO384G0548' => 'pso', 'PSO528G0225' => 'pso', 'PSO761G0506' => 'pso', 'QL01p022263' => 'qlo', 'QL05p022088' => 'qlo', 'QL09p034090' => 'qlo', 'QL10p039958' => 'qlo', 'RcHm_v2.0_Chr2g0138751' => 'rch', 'RcHm_v2.0_Chr4g0384841' => 'rch', 'RcHm_v2.0_Chr4g0414941' => 'rch', 'RcHm_v2.0_Chr5g0059381' => 'rch', 'RcHm_v2.0_Chr6g0296111' => 'rch', 'Rhsim01G0216900' => 'rsi', 'Rhsim03G0120800' => 'rsi', 'Rhsim08G0222800' => 'rsi', 'Rhsim08G0222900' => 'rsi', 'Rhsim10G0129000' => 'rsi', 'Rhsim10G0146000' => 'rsi', 'Rhsim11G0069400' => 'rsi', 'Sabra01G0144300' => 'sbr', 'Sabra01G0144500' => 'sbr', 'Sabra02G0064300' => 'sbr', 'Sabra05G0135400' => 'sbr', 'Sabra08G0027400' => 'sbr', 'Sabra09G0007900' => 'sbr', 'SalBow1G6302' => 'sbo', 'SalBow3G1645' => 'sbo', 'SalBow7G0535' => 'sbo', 'SalBow8G4558' => 'sbo', 'Sc06g0010180' => 'sci', 'Sc09g0002160' => 'sci', 'Sc09g0006430' => 'sci', 'Sc15g0001300' => 'sci', 'Sc15g0002850' => 'sci', 'Sed0009545' => 'sed', 'Sed0011994' => 'sed', 'Sed0016452' => 'sed', 'Sed0017843' => 'sed', 'Sed0019017' => 'sed', 'Sed0022712' => 'sed', 'SEGI_18718' => 'sgi', 'SEGI_40195' => 'sgi', 'SGA_v2.0_scaffold20G08961' => 'sas', 'SGA_v2.0_scaffold24G10454' => 'sas', 'SGA_v2.0_scaffold37G14841' => 'sas', 'SGA_v2.0_scaffold52G18959' => 'sas', 'SGA_v2.0_scaffold62G21425' => 'sas', 'SGA_v2.0_scaffold97G29226' => 'sas', 'SHI06101' => 'shi', 'SHI10973' => 'shi', 'SMO144G0167' => 'smo', 'SMO164G0065' => 'smo', 'SMO356G0763' => 'smo', 'Solyc03g120720.3' => 'sly', 'Solyc04g049450.3' => 'sly', 'Solyc05g018700.4' => 'sly', 'Solyc06g005940.3' => 'sly', 'Solyc06g060290.4' => 'sly', 'Solyc06g075210.4' => 'sly', 'Solyc07g021490.3' => 'sly', 'Solyc11g069400.2' => 'sly', 'Sopen03g039540' => 'spe', 'Sopen04g019420' => 'spe', 'Sopen05g015910' => 'spe', 'Sopen05g034790' => 'spe', 'Sopen06g001910' => 'spe', 'Sopen06g020400' => 'spe', 'Sopen06g031620' => 'spe', 'Sopen07g010820' => 'spe', 'Sopen11g028120' => 'spe', 'Sp1g19310' => 'spa', 'Sp1g38800' => 'spa', 'Sp3g14460' => 'spa', 'Sp5g07460' => 'spa', 'Sp5g32670' => 'spa', 'Sp5g32680' => 'spa', 'Sp5g32690' => 'spa', 'Sp6g22210' => 'spa', 'TAR376G0301' => 'tar', 'TAR624G1412' => 'tar', 'TAR625G0532' => 'tar', 'TAR628G1234' => 'tar', 'TAR629G2915' => 'tar', 'TAR633G1008' => 'tar', 'THA.LOC104799502' => 'tha', 'THA.LOC104800203' => 'tha', 'THA.LOC104809983' => 'tha', 'THA.LOC104813150' => 'tha', 'THA.LOC104813667' => 'tha', 'THA.LOC104817984' => 'tha', 'THA.LOC104824238' => 'tha', 'Thecc.06G091400' => 'tca', 'Thecc.08G127800' => 'tca', 'Thecc.09G340300' => 'tca', 'Thecc.10G073200' => 'tca', 'Thhalv10007438m.g' => 'esa', 'Thhalv10010244m.g' => 'esa', 'Thhalv10011373m.g' => 'esa', 'Thhalv10013040m.g' => 'esa', 'Thhalv10018420m.g' => 'esa', 'Thhalv10020584m.g' => 'esa', 'TPR.G11507' => 'tpr', 'TPR.G15563' => 'tpr', 'TPR.G19296' => 'tpr', 'TPR.G37182' => 'tpr', 'TWI18G0861' => 'twi', 'TWI31G0560' => 'twi', 'TWI34G0025' => 'twi', 'TWI38G0851' => 'twi', 'TWI38G1741' => 'twi', 'TWI38G1746' => 'twi', 'TWI60G1410' => 'twi', 'TWI79G0739' => 'twi', 'unitig_32.g11597' => 'ugi', 'unitig_736.g22646' => 'ugi', 'unitig_749.g13931' => 'ugi', 'unitig_899.g14645' => 'ugi', 'unitig_899.g14915' => 'ugi', 'vmacro00842' => 'vma', 'vmacro07074' => 'vma', 'vmacro07075' => 'vma', 'vmacro12768' => 'vma', 'vmacro14438' => 'vma', 'vmacro18895' => 'vma', 'VMungo0331G0309' => 'vmu', 'VMungo0464G0645' => 'vmu', 'VMungo1080G0895' => 'vmu', 'VMungo1080G1215' => 'vmu', 'VMungo1127G1131' => 'vmu', 'VMungo1309G0671' => 'vmu', 'VMungo1309G2940' => 'vmu', 'Zm00001eb112590' => 'zma', 'Zm00001eb135560' => 'zma', 'Zm00001eb168910' => 'zma', 'Zm00001eb210140' => 'zma', 'Zm00001eb229180' => 'zma', 'Zm00001eb265870' => 'zma', 'Zm00001eb375710' => 'zma', 'Zm00001eb383220' => 'zma', 'Zm00001eb422800' => 'zma' ) $gf_id = 'HOM05D000847' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000847' ) $data_identifier = 'HOM05D000847' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 7, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 8, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 9, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 30, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 11, 'cansat' => (int) 3, 'chi' => (int) 7, 'cru' => (int) 7, 'car' => (int) 4, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 7, 'ccl' => (int) 7, 'cil' => (int) 6, 'cla' => (int) 4, 'col' => (int) 7, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 9, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 6, 'eca' => (int) 5, 'bvu' => (int) 8, 'egr' => (int) 3, 'fan' => (int) 12, 'fve' => (int) 3, 'gma' => (int) 12, 'ghi' => (int) 13, 'gra' => (int) 7, 'vvi' => (int) 6, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 4, 'sun' => (int) 7, 'lal' => (int) 6, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 4, 'mbi' => (int) 7, 'mco' => (int) 3, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 9, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 5, 'oeu' => (int) 11, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 13, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 5, 'rsi' => (int) 7, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 2, 'sas' => (int) 6, 'shi' => (int) 2, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 8, 'tar' => (int) 6, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb422800' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1